Negative Feedback Marchetti Model
Samuel Isaacson, Chris Rackauckas
using DiffEqBase, OrdinaryDiffEq, Catalyst, DiffEqJump, DiffEqProblemLibrary.JumpProblemLibrary, Plots, Statistics gr() fmt = :png JumpProblemLibrary.importjumpproblems()
Model and example solutions
Here we implement the gene expression model from appendix A.6 of Marchetti, Priami and Thanh, Simulation Algorithms for Comptuational Systems Biology, Springer (2017).
jprob = prob_jump_dnadimer_repressor rn = jprob.network rnpar = jprob.rates varlabels = jprob.prob_data["specs_names"] u0 = jprob.u0 tf = jprob.tstop
4000.0
u0f = [1000., 0., 0., 0.,0.] odeprob = ODEProblem(rn, u0f, (0.,tf),rnpar) solution = solve(odeprob,Tsit5()) plot(solution, format=:png, label=varlabels)
